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Cobalt in PDB 9ejv: Co-Mahf-9 A8R Metal Alpha-Helix Framework

Protein crystallography data

The structure of Co-Mahf-9 A8R Metal Alpha-Helix Framework, PDB code: 9ejv was solved by R.M.Richardson-Matthews, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.18 / 0.92
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 9.682, 16.26, 24.696, 99.61, 97.48, 107.03
R / Rfree (%) 11.3 / 13.5

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Co-Mahf-9 A8R Metal Alpha-Helix Framework (pdb code 9ejv). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Co-Mahf-9 A8R Metal Alpha-Helix Framework, PDB code: 9ejv:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 9ejv

Go back to Cobalt Binding Sites List in 9ejv
Cobalt binding site 1 out of 2 in the Co-Mahf-9 A8R Metal Alpha-Helix Framework


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Co-Mahf-9 A8R Metal Alpha-Helix Framework within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co101

b:4.8
occ:1.00
OE1 B:GLU4 2.1 6.0 1.0
O B:HOH201 2.1 6.5 1.0
CD B:GLU4 3.0 5.4 1.0
OE2 B:GLU4 3.2 6.4 1.0
O B:HOH209 4.3 10.3 1.0
CG B:GLU4 4.4 5.0 1.0
O B:HOH208 4.4 10.5 1.0
HA B:GLU4 4.5 4.8 1.0
HG2 B:GLU4 4.6 6.0 1.0
HB2 B:GLU4 4.6 5.4 1.0
CB B:GLU4 4.9 4.5 1.0

Cobalt binding site 2 out of 2 in 9ejv

Go back to Cobalt Binding Sites List in 9ejv
Cobalt binding site 2 out of 2 in the Co-Mahf-9 A8R Metal Alpha-Helix Framework


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Co-Mahf-9 A8R Metal Alpha-Helix Framework within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co102

b:5.2
occ:1.00
NE2 B:HIS7 2.1 5.2 1.0
CE1 B:HIS7 3.1 4.8 1.0
CD2 B:HIS7 3.1 4.8 1.0
HE1 B:HIS7 3.3 5.8 1.0
HD2 B:HIS7 3.3 5.7 1.0
ND1 B:HIS7 4.2 4.9 1.0
CG B:HIS7 4.3 4.5 1.0
HD1 B:HIS7 5.0 5.9 1.0

Reference:

R.Richardson-Matthews, K.Velko, B.Bhunia, S.Ghosh, J.Oktawiec, J.S.Brunzelle, V.T.Dang, A.I.Nguyen. Metal-Alpha-Helix Peptide Frameworks. J.Am.Chem.Soc. 2025.
ISSN: ESSN 1520-5126
PubMed: 40328673
DOI: 10.1021/JACS.5C04078
Page generated: Sun Jul 13 22:13:55 2025

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