Cobalt in PDB 9i2l: BTUJ2 - DUF4465 Domain Containing Protein

The structure of BTUJ2 - DUF4465 Domain Containing Protein, PDB code: 9i2l was solved by C.Clarke, M.Banasik, R.Pickersgill, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	70.47 / 2.73
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	83.746, 97.98, 70.472, 90, 90, 90
R / Rfree (%)	18.5 / 26.1

The structure of BTUJ2 - DUF4465 Domain Containing Protein also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Cobalt atom in the BTUJ2 - DUF4465 Domain Containing Protein (pdb code 9i2l). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the BTUJ2 - DUF4465 Domain Containing Protein, PDB code: 9i2l:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the BTUJ2 - DUF4465 Domain Containing Protein


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of BTUJ2 - DUF4465 Domain Containing Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Co401 b:33.5 occ:1.00 CO B:CNC401 0.0 33.5 1.0 C1A B:CNC401 1.8 42.2 1.0 N21 B:CNC401 1.8 33.1 1.0 N23 B:CNC401 1.9 37.5 1.0 N22 B:CNC401 1.9 37.1 1.0 N24 B:CNC401 1.9 35.8 1.0 N3B B:CNC401 2.0 33.9 1.0 C9 B:CNC401 2.7 35.7 1.0 C19 B:CNC401 2.7 33.8 1.0 C1 B:CNC401 2.8 34.7 1.0 C11 B:CNC401 2.8 40.6 1.0 C14 B:CNC401 2.9 43.8 1.0 C4 B:CNC401 2.9 34.4 1.0 C6 B:CNC401 2.9 34.4 1.0 C16 B:CNC401 2.9 43.9 1.0 C2B B:CNC401 3.0 37.0 1.0 N1A B:CNC401 3.0 42.7 1.0 C9B B:CNC401 3.1 33.8 1.0 C10 B:CNC401 3.1 37.1 1.0 H2B B:CNC401 3.1 38.4 1.0 H201 B:CNC401 3.2 36.8 1.0 C15 B:CNC401 3.3 49.0 1.0 C5 B:CNC401 3.3 30.5 1.0 H4B B:CNC401 3.3 36.8 1.0 C20 B:CNC401 3.4 37.8 1.0 H202 B:CNC401 3.6 36.8 1.0 C4B B:CNC401 3.7 36.2 1.0 H261 B:CNC401 4.0 31.3 1.0 H10 B:CNC401 4.1 37.8 1.0 C2 B:CNC401 4.1 31.8 1.0 C18 B:CNC401 4.1 37.8 1.0 C8 B:CNC401 4.1 39.4 1.0 C13 B:CNC401 4.2 45.2 1.0 C3 B:CNC401 4.2 35.0 1.0 N1B B:CNC401 4.2 45.0 1.0 C7 B:CNC401 4.2 36.7 1.0 C12 B:CNC401 4.2 43.4 1.0 H482 B:CNC401 4.3 50.6 1.0 C17 B:CNC401 4.3 41.6 1.0 C8B B:CNC401 4.3 38.1 1.0 H18 B:CNC401 4.3 37.8 1.0 H203 B:CNC401 4.3 36.8 1.0 H371 B:CNC401 4.5 34.7 1.0 H471 B:CNC401 4.5 41.9 1.0 C26 B:CNC401 4.6 31.8 1.0 H412 B:CNC401 4.6 47.4 1.0 H543 B:CNC401 4.6 43.1 1.0 C48 B:CNC401 4.7 47.8 1.0 H8 B:CNC401 4.7 39.5 1.0 OH B:TYR165 4.7 40.4 1.0 C37 B:CNC401 4.8 34.4 1.0 C35 B:CNC401 4.8 29.0 1.0 C53 B:CNC401 4.9 53.7 1.0 H3 B:CNC401 4.9 34.6 1.0 H481 B:CNC401 4.9 50.5 1.0 H13 B:CNC401 4.9 45.3 1.0 H262 B:CNC401 4.9 31.2 1.0 C47 B:CNC401 4.9 41.3 1.0 C41 B:CNC401 4.9 47.6 1.0 H372 B:CNC401 4.9 34.6 1.0

Cobalt binding site 2 out of 2 in the BTUJ2 - DUF4465 Domain Containing Protein


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of BTUJ2 - DUF4465 Domain Containing Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Co401 b:30.6 occ:1.00 CO A:CNC401 0.0 30.6 1.0 C1A A:CNC401 1.8 31.3 1.0 N24 A:CNC401 1.8 28.1 1.0 N23 A:CNC401 1.9 29.9 1.0 N22 A:CNC401 1.9 30.1 1.0 N21 A:CNC401 1.9 26.8 1.0 N3B A:CNC401 2.1 30.6 1.0 C19 A:CNC401 2.7 25.2 1.0 C9 A:CNC401 2.8 37.0 1.0 C14 A:CNC401 2.8 27.2 1.0 C11 A:CNC401 2.8 33.3 1.0 C1 A:CNC401 2.9 25.2 1.0 C16 A:CNC401 2.9 25.1 1.0 C4 A:CNC401 2.9 26.0 1.0 N1A A:CNC401 2.9 32.4 1.0 C6 A:CNC401 3.0 28.1 1.0 C2B A:CNC401 3.0 32.2 1.0 H2B A:CNC401 3.1 32.0 1.0 C10 A:CNC401 3.2 33.9 1.0 C9B A:CNC401 3.2 30.7 1.0 C15 A:CNC401 3.3 27.2 1.0 H201 A:CNC401 3.3 27.4 1.0 C5 A:CNC401 3.4 27.1 1.0 H4B A:CNC401 3.5 32.1 1.0 C20 A:CNC401 3.5 28.3 1.0 H202 A:CNC401 3.8 27.5 1.0 C4B A:CNC401 3.8 31.8 1.0 H261 A:CNC401 3.9 28.6 1.0 C18 A:CNC401 4.0 25.2 1.0 C2 A:CNC401 4.1 26.9 1.0 C13 A:CNC401 4.1 32.5 1.0 C17 A:CNC401 4.1 27.0 1.0 H10 A:CNC401 4.1 34.5 1.0 C8 A:CNC401 4.2 39.0 1.0 C3 A:CNC401 4.2 28.7 1.0 C12 A:CNC401 4.2 34.0 1.0 N1B A:CNC401 4.2 33.0 1.0 H18 A:CNC401 4.3 26.1 1.0 C7 A:CNC401 4.3 33.6 1.0 C26 A:CNC401 4.4 28.7 1.0 C8B A:CNC401 4.4 29.6 1.0 H482 A:CNC401 4.4 38.0 1.0 H203 A:CNC401 4.4 27.5 1.0 H412 A:CNC401 4.4 45.5 1.0 H543 A:CNC401 4.5 26.6 1.0 H371 A:CNC401 4.5 31.9 1.0 H262 A:CNC401 4.6 28.6 1.0 H471 A:CNC401 4.7 29.3 1.0 OH A:TYR165 4.7 19.9 1.0 C53 A:CNC401 4.8 29.0 1.0 H13 A:CNC401 4.8 32.5 1.0 H3 A:CNC401 4.8 28.1 1.0 H8 A:CNC401 4.8 38.6 1.0 C41 A:CNC401 4.9 46.1 1.0 C35 A:CNC401 4.9 28.2 1.0 C48 A:CNC401 4.9 37.6 1.0 C54 A:CNC401 4.9 26.4 1.0 C37 A:CNC401 4.9 31.9 1.0 H422 A:CNC401 4.9 54.1 1.0 C47 A:CNC401 5.0 27.5 1.0

R.Juodeikis, R.Ulrich, C.Clarke, M.Banasik, M.Warren, R.Pickersgill. To Be Released (2024). To Be Published.