Atomistry » Cobalt » PDB 1e31-1hgw » 1eg6
Atomistry »
  Cobalt »
    PDB 1e31-1hgw »
      1eg6 »

Cobalt in PDB 1eg6: Crystal Structure Analysis of D(Cg(5-Bru)Acg) Complexes to A Phenazine

Protein crystallography data

The structure of Crystal Structure Analysis of D(Cg(5-Bru)Acg) Complexes to A Phenazine, PDB code: 1eg6 was solved by C.J.Cardin, W.A.Denny, J.R.Hobbs, J.H.Thorpe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.00
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 29.420, 53.440, 41.320, 90.00, 90.00, 90.00
R / Rfree (%) 22.8 / 34.7

Other elements in 1eg6:

The structure of Crystal Structure Analysis of D(Cg(5-Bru)Acg) Complexes to A Phenazine also contains other interesting chemical elements:

Bromine (Br) 4 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure Analysis of D(Cg(5-Bru)Acg) Complexes to A Phenazine (pdb code 1eg6). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure Analysis of D(Cg(5-Bru)Acg) Complexes to A Phenazine, PDB code: 1eg6:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 1eg6

Go back to Cobalt Binding Sites List in 1eg6
Cobalt binding site 1 out of 2 in the Crystal Structure Analysis of D(Cg(5-Bru)Acg) Complexes to A Phenazine


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure Analysis of D(Cg(5-Bru)Acg) Complexes to A Phenazine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co40

b:25.5
occ:0.50
O A:HOH42 2.1 40.3 1.0
N7 A:DG6 2.1 20.9 1.0
O A:HOH43 2.1 34.2 1.0
C8 A:DG6 2.9 22.9 1.0
C5 A:DG6 3.3 28.0 1.0
O A:HOH56 3.7 35.4 0.5
O6 A:DG6 3.9 39.4 1.0
C6 A:DG6 4.0 23.3 1.0
O A:HOH46 4.0 43.0 1.0
OP2 A:DG6 4.0 25.3 1.0
N9 A:DG6 4.1 26.1 1.0
C4 A:DG6 4.4 30.5 1.0
O5' A:DG6 5.0 26.2 1.0
P A:DG6 5.0 25.9 1.0

Cobalt binding site 2 out of 2 in 1eg6

Go back to Cobalt Binding Sites List in 1eg6
Cobalt binding site 2 out of 2 in the Crystal Structure Analysis of D(Cg(5-Bru)Acg) Complexes to A Phenazine


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure Analysis of D(Cg(5-Bru)Acg) Complexes to A Phenazine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co43

b:45.2
occ:1.00
N7 B:DG2 2.1 23.9 1.0
O B:HOH53 2.1 39.5 1.0
O B:HOH55 2.1 56.4 1.0
O B:HOH51 2.1 54.8 1.0
O B:HOH54 2.1 34.7 1.0
O B:HOH52 2.1 49.0 1.0
C8 B:DG2 2.9 26.3 1.0
C5 B:DG2 3.2 24.1 1.0
O6 B:DG2 3.7 23.3 1.0
C6 B:DG2 3.9 23.8 1.0
N9 B:DG2 4.1 25.0 1.0
C4 B:DG2 4.3 26.0 1.0
O B:HOH63 4.4 30.8 1.0
O4 B:DU3 4.5 29.6 1.0
BR B:BR44 4.6 39.5 1.0
OP1 B:DG2 4.7 46.0 0.5
OP2 B:DG2 4.8 41.6 0.5

Reference:

J.H.Thorpe, J.R.Hobbs, A.K.Todd, W.A.Denny, P.Charlton, C.J.Cardin. Guanine Specific Binding at A Dna Junction Formed By D[Cg(5-Bru)Acg](2) with A Topoisomerase Poison in the Presence of Co(2+) Ions. Biochemistry V. 39 15055 2000.
ISSN: ISSN 0006-2960
PubMed: 11106483
DOI: 10.1021/BI001749P
Page generated: Sun Dec 13 10:34:36 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy