Cobalt in the structure of Average Solution Structure of D(Ttggccaa)2 Bound to Chromomycin-A3 and Cobalt (pdb 1eki)

The binding sites of Cobalt atom in the structure of Average Solution Structure of D(Ttggccaa)2 Bound to Chromomycin-A3 and Cobalt (pdb code 1eki). This binding sites where shown with 5.0 Angstroms radius around Cobalt atom. The 1eki structure was solved by M.GOCHIN, with NMR in Solution technique. Cobalt Binding Sites: Cobalt binding site 1 out of 1 in 1eki Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cobalt in the PDB 1eki. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Dg4, A: Dc5, A: Dc6, B: Dg14, B: Dc15, B: Dc16, B: Dda26, B: Dda36, B: Cph23, A: Cph33, conact list: Atom Atom Distance (A) Co H21 A:Dg4 4.62 Co H22 A:Dg4 4.73 Co H2' A:Dc5 4.11 Co H1' A:Dc5 4.06 Co C1' A:Dc5 4.99 Co O2 A:Dc5 4.16 Co H5' A:Dc6 4.40 Co C4' A:Dc6 4.80 Co H1' A:Dc6 4.93 Co H4' A:Dc6 4.28 Co O4' A:Dc6 4.14 Co H21 B:Dg14 4.62 Co H22 B:Dg14 4.75 Co H2' B:Dc15 4.16 Co H1' B:Dc15 4.07 Co C1' B:Dc15 4.99 Co O2 B:Dc15 4.19 Co H5' B:Dc16 4.44 Co C4' B:Dc16 4.96 Co H4' B:Dc16 4.58 Co O4' B:Dc16 4.18 Co C1 B:Dda26 4.47 Co O1 B:Dda26 4.64 Co H3 B:Dda26 4.52 Co C2 B:Dda26 4.97 Co H1 B:Dda26 3.70 Co H22 B:Dda26 4.47 Co C1 B:Dda36 4.55 Co O1 B:Dda36 4.78 Co H3 B:Dda36 4.34 Co H1 B:Dda36 3.65 Co H22 B:Dda36 4.59 Co C8A B:Cph23 3.82 Co C1 B:Cph23 2.76 Co O8 B:Cph23 3.84 Co O1 B:Cph23 1.86 Co C8 B:Cph23 4.36 Co C2 B:Cph23 4.21 Co C4A B:Cph23 4.46 Co O9 B:Cph23 1.91 Co H2 B:Cph23 4.66 Co C9A B:Cph23 3.06 Co C9 B:Cph23 2.57 Co C5A B:Cph23 4.98 Co HO8 B:Cph23 2.93 Co C8A A:Cph33 3.68 Co C1 A:Cph33 2.75 Co O8 A:Cph33 3.88 Co O1 A:Cph33 1.93 Co C8 A:Cph33 4.29 Co C2 A:Cph33 4.11 Co C4A A:Cph33 4.27 Co O9 A:Cph33 1.90 Co H2 A:Cph33 4.30 Co C9A A:Cph33 2.88 Co C9 A:Cph33 2.41 Co C5A A:Cph33 4.83 Co HO8 A:Cph33 2.97 interactive model: