Cobalt in the structure of Solution Structure of Rnase P Rna (M1 Rna) P4 Stem Oligoribonucleotide Complexed With Cobalt (III) Hexamine, uc(Nmr), Minimized Average Structure (pdb 1f78)

The binding sites of Cobalt atom in the structure of Solution Structure of Rnase P Rna (M1 Rna) P4 Stem Oligoribonucleotide Complexed With Cobalt (III) Hexamine, uc(Nmr), Minimized Average Structure (pdb code 1f78). This binding sites where shown with 5.0 Angstroms radius around Cobalt atom. The 1f78 structure was solved by M.SCHMITZ, I.TINOCO JR., with NMR in Solution technique. Cobalt Binding Sites: Cobalt binding site 1 out of 1 in 1f78 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cobalt in the PDB 1f78. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G5, A: C8, A: C20, A: G21, A: Nco28, conact list: Atom Atom Distance (A) Co H8 A:G5 4.70 Co N7 A:G5 4.85 Co H42 A:C8 4.61 Co H41 A:C8 4.95 Co H42 A:C20 4.34 Co N4 A:C20 4.88 Co O6 A:G21 4.51 Co HN61 A:Nco28 2.55 Co HN11 A:Nco28 2.55 Co N3 A:Nco28 1.99 Co N2 A:Nco28 2.00 Co HN41 A:Nco28 2.55 Co HN62 A:Nco28 2.54 Co HN33 A:Nco28 2.55 Co HN51 A:Nco28 2.54 Co HN42 A:Nco28 2.54 Co HN21 A:Nco28 2.54 Co N5 A:Nco28 1.99 Co HN43 A:Nco28 2.54 Co HN12 A:Nco28 2.55 Co HN52 A:Nco28 2.54 Co N1 A:Nco28 1.99 Co N6 A:Nco28 1.99 Co CO A:Nco28 0.00 Co HN23 A:Nco28 2.55 Co HN22 A:Nco28 2.55 Co HN32 A:Nco28 2.55 Co HN63 A:Nco28 2.55 Co HN31 A:Nco28 2.54 Co HN53 A:Nco28 2.54 Co N4 A:Nco28 1.99 Co HN13 A:Nco28 2.54 interactive model: