Cobalt in PDB 1fdg: Binding of A Macrocyclic Bisacridine and Ametantrone to Cgtacg Involves Similar Unusual Intercalation Platforms (Ametantrone Complex)

The structure of Binding of A Macrocyclic Bisacridine and Ametantrone to Cgtacg Involves Similar Unusual Intercalation Platforms (Ametantrone Complex), PDB code: 1fdg was solved by X.-L.Yang, H.Robinson, Y.-G.Gao, A.H.-J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.60
Space group	C 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	29.094, 52.714, 40.183, 90.00, 90.00, 90.00
R / Rfree (%)	26.4 / 31.4

The structure of Binding of A Macrocyclic Bisacridine and Ametantrone to Cgtacg Involves Similar Unusual Intercalation Platforms (Ametantrone Complex) also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Cobalt atom in the Binding of A Macrocyclic Bisacridine and Ametantrone to Cgtacg Involves Similar Unusual Intercalation Platforms (Ametantrone Complex) (pdb code 1fdg). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Binding of A Macrocyclic Bisacridine and Ametantrone to Cgtacg Involves Similar Unusual Intercalation Platforms (Ametantrone Complex), PDB code: 1fdg:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Binding of A Macrocyclic Bisacridine and Ametantrone to Cgtacg Involves Similar Unusual Intercalation Platforms (Ametantrone Complex)


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Binding of A Macrocyclic Bisacridine and Ametantrone to Cgtacg Involves Similar Unusual Intercalation Platforms (Ametantrone Complex) within 5.0Å range: probe atom residue distance (Å) B Occ A:Co21 b:35.3 occ:1.00 O A:HOH123 2.0 28.7 1.0 O A:HOH126 2.0 39.3 1.0 O A:HOH124 2.0 35.5 1.0 O A:HOH127 2.0 0.9 1.0 O A:HOH125 2.0 34.3 1.0 N7 A:DG2 2.2 23.5 1.0 C8 A:DG2 3.1 23.4 1.0 C5 A:DG2 3.3 22.9 1.0 O6 A:DG2 3.8 21.8 1.0 C6 A:DG2 3.9 19.7 1.0 O3' A:DC1 4.0 46.8 1.0 O A:HOH101 4.1 28.6 1.0 O A:HOH114 4.3 46.0 1.0 N9 A:DG2 4.3 26.6 1.0 C4 A:DG2 4.4 23.4 1.0 O4 A:DT3 4.5 26.1 1.0 O A:HOH105 4.6 41.0 1.0 C7 A:DT3 4.7 31.3 1.0

Cobalt binding site 2 out of 2 in the Binding of A Macrocyclic Bisacridine and Ametantrone to Cgtacg Involves Similar Unusual Intercalation Platforms (Ametantrone Complex)


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Binding of A Macrocyclic Bisacridine and Ametantrone to Cgtacg Involves Similar Unusual Intercalation Platforms (Ametantrone Complex) within 5.0Å range: probe atom residue distance (Å) B Occ B:Co22 b:20.5 occ:0.50 O B:HOH122 1.5 24.5 1.0 O B:HOH121 1.8 25.8 1.0 N7 B:DG12 2.2 18.9 1.0 C8 B:DG12 3.0 26.2 1.0 C5 B:DG12 3.3 24.9 1.0 O6 B:DG12 3.9 22.4 1.0 C6 B:DG12 4.0 26.1 1.0 OP2 B:DG12 4.0 16.3 1.0 N9 B:DG12 4.3 22.4 1.0 C4 B:DG12 4.4 18.7 1.0 O B:HOH115 4.9 61.8 1.0 O5' B:DG12 5.0 18.7 1.0

X.L.Yang, H.Robinson, Y.G.Gao, A.H.Wang. Binding of A Macrocyclic Bisacridine and Ametantrone to Cgtacg Involves Similar Unusual Intercalation Platforms. Biochemistry V. 39 10950 2000.
ISSN: ISSN 0006-2960
PubMed: 10998231
DOI: 10.1021/BI001319Z