Cobalt in the structure of Co(III)-Bleomycin-Ooh Bound to An Oligonucleotide Containing A Phosphoglycolate Lesion (pdb 1g5l)

The binding sites of Cobalt atom in the structure of Co(III)-Bleomycin-Ooh Bound to An Oligonucleotide Containing A Phosphoglycolate Lesion (pdb code 1g5l). This binding sites where shown with 5.0 Angstroms radius around Cobalt atom. The 1g5l structure was solved by S.T.HOEHN, H.-D.JUNKER, R.C.BUNT, C.J.TURNER, J.STUBBE, with NMR in Solution technique. Cobalt Binding Sites: Cobalt binding site 1 out of 1 in 1g5l Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cobalt in the PDB 1g5l. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: C: Dt19, C: Blb1, C: Peo11, C: Dt19, C: Blb1, C: Peo11, C: Dt19, C: Blb1, C: Peo11, C: Dt19, C: Blb1, C: Peo11, C: Dt19, C: Blb1, C: Peo11, C: Dt19, C: Blb1, C: Peo11, B: Dg11, C: Dt19, C: Blb1, C: Peo11, C: Dt19, C: Blb1, C: Peo11, B: Dg11, C: Blb1, C: Peo11, C: Dt19, C: Blb1, C: Peo11, conact list: Atom Atom Distance (A) Co H4' C:Dt19 4.42 Co C1 C:Blb1 3.59 Co OH1 C:Blb1 3.69 Co C8 C:Blb1 4.52 Co NA C:Blb1 4.84 Co HO3 C:Blb1 4.94 Co H3X C:Blb1 3.78 Co HBA C:Blb1 4.52 Co O4 C:Blb1 4.78 Co C12 C:Blb1 2.80 Co NB C:Blb1 1.94 Co C34 C:Blb1 4.94 Co C28 C:Blb1 4.08 Co C30 C:Blb1 3.95 Co H6 C:Blb1 2.99 Co H5X C:Blb1 4.92 Co H14 C:Blb1 4.43 Co NI C:Blb1 4.08 Co NC C:Blb1 1.99 Co O1 C:Blb1 3.34 Co NE C:Blb1 4.05 Co C31 C:Blb1 4.93 Co HNK C:Blb1 2.89 Co HNC C:Blb1 2.49 Co C5 C:Blb1 4.29 Co NG C:Blb1 1.85 Co H13 C:Blb1 3.93 Co H2 C:Blb1 3.77 Co C13 C:Blb1 3.05 Co C27 C:Blb1 2.91 Co HB2 C:Blb1 1.60 Co OH3 C:Blb1 4.97 Co HNI C:Blb1 4.97 Co H29 C:Blb1 3.13 Co C7 C:Blb1 2.77 Co NK C:Blb1 3.65 Co C29 C:Blb1 2.93 Co H3E C:Blb1 3.26 Co C2 C:Blb1 2.86 Co NH C:Blb1 1.92 Co O40 C:Blb1 4.71 Co NJ C:Blb1 1.91 Co H60 C:Blb1 4.33 Co O12 C:Blb1 3.96 Co HNL C:Blb1 3.93 Co NL C:Blb1 4.87 Co C6 C:Blb1 2.82 Co H34 C:Blb1 3.93 Co C10 C:Blb1 2.76 Co H5E C:Blb1 4.69 Co C9 C:Blb1 4.07 Co C14 C:Blb1 3.40 Co H28 C:Blb1 4.87 Co HB1 C:Blb1 1.43 Co C3 C:Blb1 2.84 Co O1 C:Peo11 2.04 Co HO2 C:Peo11 3.71 Co O2 C:Peo11 3.07 Co H4' C:Dt19 4.42 Co C1 C:Blb1 3.59 Co OH1 C:Blb1 3.69 Co C8 C:Blb1 4.52 Co NA C:Blb1 4.84 Co HO3 C:Blb1 4.94 Co H3X C:Blb1 3.78 Co HBA C:Blb1 4.52 Co O4 C:Blb1 4.78 Co C12 C:Blb1 2.80 Co NB C:Blb1 1.94 Co C34 C:Blb1 4.94 Co C28 C:Blb1 4.08 Co C30 C:Blb1 3.95 Co H6 C:Blb1 2.99 Co H5X C:Blb1 4.92 Co H14 C:Blb1 4.43 Co NI C:Blb1 4.08 Co NC C:Blb1 1.99 Co O1 C:Blb1 3.34 Co NE C:Blb1 4.05 Co C31 C:Blb1 4.93 Co HNK C:Blb1 2.89 Co HNC C:Blb1 2.49 Co C5 C:Blb1 4.29 Co NG C:Blb1 1.85 Co H13 C:Blb1 3.93 Co H2 C:Blb1 3.77 Co C13 C:Blb1 3.05 Co C27 C:Blb1 2.91 Co HB2 C:Blb1 1.60 Co OH3 C:Blb1 4.97 Co HNI C:Blb1 4.97 Co H29 C:Blb1 3.13 Co C7 C:Blb1 2.77 Co NK C:Blb1 3.65 Co C29 C:Blb1 2.93 Co H3E C:Blb1 3.26 Co C2 C:Blb1 2.86 Co NH C:Blb1 1.92 Co O40 C:Blb1 4.71 Co NJ C:Blb1 1.91 Co H60 C:Blb1 4.33 Co O12 C:Blb1 3.96 Co HNL C:Blb1 3.93 Co NL C:Blb1 4.87 Co C6 C:Blb1 2.82 Co H34 C:Blb1 3.93 Co C10 C:Blb1 2.76 Co H5E C:Blb1 4.69 Co C9 C:Blb1 4.07 Co C14 C:Blb1 3.40 Co H28 C:Blb1 4.87 Co HB1 C:Blb1 1.43 Co C3 C:Blb1 2.84 Co O1 C:Peo11 2.04 Co HO2 C:Peo11 3.71 Co O2 C:Peo11 3.07 Co H4' C:Dt19 4.42 Co C1 C:Blb1 3.59 Co OH1 C:Blb1 3.69 Co C8 C:Blb1 4.52 Co NA C:Blb1 4.84 Co HO3 C:Blb1 4.94 Co H3X C:Blb1 3.78 Co HBA C:Blb1 4.52 Co O4 C:Blb1 4.78 Co C12 C:Blb1 2.80 Co NB C:Blb1 1.94 Co C34 C:Blb1 4.94 Co C28 C:Blb1 4.08 Co C30 C:Blb1 3.95 Co H6 C:Blb1 2.99 Co H5X C:Blb1 4.92 Co H14 C:Blb1 4.43 Co NI C:Blb1 4.08 Co NC C:Blb1 1.99 Co O1 C:Blb1 3.34 Co NE C:Blb1 4.05 Co C31 C:Blb1 4.93 Co HNK C:Blb1 2.89 Co HNC C:Blb1 2.49 Co C5 C:Blb1 4.29 Co NG C:Blb1 1.85 Co H13 C:Blb1 3.93 Co H2 C:Blb1 3.77 Co C13 C:Blb1 3.05 Co C27 C:Blb1 2.91 Co HB2 C:Blb1 1.60 Co OH3 C:Blb1 4.97 Co HNI C:Blb1 4.97 Co H29 C:Blb1 3.13 Co C7 C:Blb1 2.77 Co NK C:Blb1 3.65 Co C29 C:Blb1 2.93 Co H3E C:Blb1 3.26 Co C2 C:Blb1 2.86 Co NH C:Blb1 1.92 Co O40 C:Blb1 4.71 Co NJ C:Blb1 1.91 Co H60 C:Blb1 4.33 Co O12 C:Blb1 3.96 Co HNL C:Blb1 3.93 Co NL C:Blb1 4.87 Co C6 C:Blb1 2.82 Co H34 C:Blb1 3.93 Co C10 C:Blb1 2.76 Co H5E C:Blb1 4.69 Co C9 C:Blb1 4.07 Co C14 C:Blb1 3.40 Co H28 C:Blb1 4.87 Co HB1 C:Blb1 1.43 Co C3 C:Blb1 2.84 Co O1 C:Peo11 2.04 Co HO2 C:Peo11 3.71 Co O2 C:Peo11 3.07 Co H4' C:Dt19 4.42 Co C1 C:Blb1 3.59 Co OH1 C:Blb1 3.69 Co C8 C:Blb1 4.52 Co NA C:Blb1 4.84 Co HO3 C:Blb1 4.94 Co H3X C:Blb1 3.78 Co HBA C:Blb1 4.52 Co O4 C:Blb1 4.78 Co C12 C:Blb1 2.80 Co NB C:Blb1 1.94 Co C34 C:Blb1 4.94 Co C28 C:Blb1 4.08 Co C30 C:Blb1 3.95 Co H6 C:Blb1 2.99 Co H5X C:Blb1 4.92 Co H14 C:Blb1 4.43 Co NI C:Blb1 4.08 Co NC C:Blb1 1.99 Co O1 C:Blb1 3.34 Co NE C:Blb1 4.05 Co C31 C:Blb1 4.93 Co HNK C:Blb1 2.89 Co HNC C:Blb1 2.49 Co C5 C:Blb1 4.29 Co NG C:Blb1 1.85 Co H13 C:Blb1 3.93 Co H2 C:Blb1 3.77 Co C13 C:Blb1 3.05 Co C27 C:Blb1 2.91 Co HB2 C:Blb1 1.60 Co OH3 C:Blb1 4.97 Co HNI C:Blb1 4.97 Co H29 C:Blb1 3.13 Co C7 C:Blb1 2.77 Co NK C:Blb1 3.65 Co C29 C:Blb1 2.93 Co H3E C:Blb1 3.26 Co C2 C:Blb1 2.86 Co NH C:Blb1 1.92 Co O40 C:Blb1 4.71 Co NJ C:Blb1 1.91 Co H60 C:Blb1 4.33 Co O12 C:Blb1 3.96 Co HNL C:Blb1 3.93 Co NL C:Blb1 4.87 Co C6 C:Blb1 2.82 Co H34 C:Blb1 3.93 Co C10 C:Blb1 2.76 Co H5E C:Blb1 4.69 Co C9 C:Blb1 4.07 Co C14 C:Blb1 3.40 Co H28 C:Blb1 4.87 Co HB1 C:Blb1 1.43 Co C3 C:Blb1 2.84 Co O1 C:Peo11 2.04 Co HO2 C:Peo11 3.71 Co O2 C:Peo11 3.07 Co H4' C:Dt19 4.42 Co C1 C:Blb1 3.59 Co OH1 C:Blb1 3.69 Co C8 C:Blb1 4.52 Co NA C:Blb1 4.84 Co HO3 C:Blb1 4.94 Co H3X C:Blb1 3.78 Co HBA C:Blb1 4.52 Co O4 C:Blb1 4.78 Co C12 C:Blb1 2.80 Co NB C:Blb1 1.94 Co C34 C:Blb1 4.94 Co C28 C:Blb1 4.08 Co C30 C:Blb1 3.95 Co H6 C:Blb1 2.99 Co H5X C:Blb1 4.92 Co H14 C:Blb1 4.43 Co NI C:Blb1 4.08 Co NC C:Blb1 1.99 Co O1 C:Blb1 3.34 Co NE C:Blb1 4.05 Co C31 C:Blb1 4.93 Co HNK C:Blb1 2.89 Co HNC C:Blb1 2.49 Co C5 C:Blb1 4.29 Co NG C:Blb1 1.85 Co H13 C:Blb1 3.93 Co H2 C:Blb1 3.77 Co C13 C:Blb1 3.05 Co C27 C:Blb1 2.91 Co HB2 C:Blb1 1.60 Co OH3 C:Blb1 4.97 Co HNI C:Blb1 4.97 Co H29 C:Blb1 3.13 Co C7 C:Blb1 2.77 Co NK C:Blb1 3.65 Co C29 C:Blb1 2.93 Co H3E C:Blb1 3.26 Co C2 C:Blb1 2.86 Co NH C:Blb1 1.92 Co O40 C:Blb1 4.71 Co NJ C:Blb1 1.91 Co H60 C:Blb1 4.33 Co O12 C:Blb1 3.96 Co HNL C:Blb1 3.93 Co NL C:Blb1 4.87 Co C6 C:Blb1 2.82 Co H34 C:Blb1 3.93 Co C10 C:Blb1 2.76 Co H5E C:Blb1 4.69 Co C9 C:Blb1 4.07 Co C14 C:Blb1 3.40 Co H28 C:Blb1 4.87 Co HB1 C:Blb1 1.43 Co C3 C:Blb1 2.84 Co O1 C:Peo11 2.04 Co HO2 C:Peo11 3.71 Co O2 C:Peo11 3.07 Co H4' C:Dt19 4.42 Co C1 C:Blb1 3.59 Co OH1 C:Blb1 3.69 Co C8 C:Blb1 4.52 Co NA C:Blb1 4.84 Co HO3 C:Blb1 4.94 Co H3X C:Blb1 3.78 Co HBA C:Blb1 4.52 Co O4 C:Blb1 4.78 Co C12 C:Blb1 2.80 Co NB C:Blb1 1.94 Co C34 C:Blb1 4.94 Co C28 C:Blb1 4.08 Co C30 C:Blb1 3.95 Co H6 C:Blb1 2.99 Co H5X C:Blb1 4.92 Co H14 C:Blb1 4.43 Co NI C:Blb1 4.08 Co NC C:Blb1 1.99 Co O1 C:Blb1 3.34 Co NE C:Blb1 4.05 Co C31 C:Blb1 4.93 Co HNK C:Blb1 2.89 Co HNC C:Blb1 2.49 Co C5 C:Blb1 4.29 Co NG C:Blb1 1.85 Co H13 C:Blb1 3.93 Co H2 C:Blb1 3.77 Co C13 C:Blb1 3.05 Co C27 C:Blb1 2.91 Co HB2 C:Blb1 1.60 Co OH3 C:Blb1 4.97 Co HNI C:Blb1 4.97 Co H29 C:Blb1 3.13 Co C7 C:Blb1 2.77 Co NK C:Blb1 3.65 Co C29 C:Blb1 2.93 Co H3E C:Blb1 3.26 Co C2 C:Blb1 2.86 Co NH C:Blb1 1.92 Co O40 C:Blb1 4.71 Co NJ C:Blb1 1.91 Co H60 C:Blb1 4.33 Co O12 C:Blb1 3.96 Co HNL C:Blb1 3.93 Co NL C:Blb1 4.87 Co C6 C:Blb1 2.82 Co H34 C:Blb1 3.93 Co C10 C:Blb1 2.76 Co H5E C:Blb1 4.69 Co C9 C:Blb1 4.07 Co C14 C:Blb1 3.40 Co H28 C:Blb1 4.87 Co HB1 C:Blb1 1.43 Co C3 C:Blb1 2.84 Co O1 C:Peo11 2.04 Co HO2 C:Peo11 3.71 Co O2 C:Peo11 3.07 Co H4' C:Dt19 4.42 Co C1 C:Blb1 3.59 Co OH1 C:Blb1 3.69 Co C8 C:Blb1 4.52 Co NA C:Blb1 4.84 Co HO3 C:Blb1 4.94 Co H3X C:Blb1 3.78 Co HBA C:Blb1 4.52 Co O4 C:Blb1 4.78 Co C12 C:Blb1 2.80 Co NB C:Blb1 1.94 Co C34 C:Blb1 4.94 Co C28 C:Blb1 4.08 Co C30 C:Blb1 3.95 Co H6 C:Blb1 2.99 Co H5X C:Blb1 4.92 Co H14 C:Blb1 4.43 Co NI C:Blb1 4.08 Co NC C:Blb1 1.99 Co O1 C:Blb1 3.34 Co NE C:Blb1 4.05 Co C31 C:Blb1 4.93 Co HNK C:Blb1 2.89 Co HNC C:Blb1 2.49 Co C5 C:Blb1 4.29 Co NG C:Blb1 1.85 Co H13 C:Blb1 3.93 Co H2 C:Blb1 3.77 Co C13 C:Blb1 3.05 Co C27 C:Blb1 2.91 Co HB2 C:Blb1 1.60 Co OH3 C:Blb1 4.97 Co HNI C:Blb1 4.97 Co H29 C:Blb1 3.13 Co C7 C:Blb1 2.77 Co NK C:Blb1 3.65 Co C29 C:Blb1 2.93 Co H3E C:Blb1 3.26 Co C2 C:Blb1 2.86 Co NH C:Blb1 1.92 Co O40 C:Blb1 4.71 Co NJ C:Blb1 1.91 Co H60 C:Blb1 4.33 Co O12 C:Blb1 3.96 Co HNL C:Blb1 3.93 Co NL C:Blb1 4.87 Co C6 C:Blb1 2.82 Co H34 C:Blb1 3.93 Co C10 C:Blb1 2.76 Co H5E C:Blb1 4.69 Co C9 C:Blb1 4.07 Co C14 C:Blb1 3.40 Co H28 C:Blb1 4.87 Co HB1 C:Blb1 1.43 Co C3 C:Blb1 2.84 Co O1 C:Peo11 2.04 Co HO2 C:Peo11 3.71 Co O2 C:Peo11 3.07 Co H4' C:Dt19 4.42 Co C1 C:Blb1 3.59 Co OH1 C:Blb1 3.69 Co C8 C:Blb1 4.52 Co NA C:Blb1 4.84 Co HO3 C:Blb1 4.94 Co H3X C:Blb1 3.78 Co HBA C:Blb1 4.52 Co O4 C:Blb1 4.78 Co C12 C:Blb1 2.80 Co NB C:Blb1 1.94 Co C34 C:Blb1 4.94 Co C28 C:Blb1 4.08 Co C30 C:Blb1 3.95 Co H6 C:Blb1 2.99 Co H5X C:Blb1 4.92 Co H14 C:Blb1 4.43 Co NI C:Blb1 4.08 Co NC C:Blb1 1.99 Co O1 C:Blb1 3.34 Co NE C:Blb1 4.05 Co C31 C:Blb1 4.93 Co HNK C:Blb1 2.89 Co HNC C:Blb1 2.49 Co C5 C:Blb1 4.29 Co NG C:Blb1 1.85 Co H13 C:Blb1 3.93 Co H2 C:Blb1 3.77 Co C13 C:Blb1 3.05 Co C27 C:Blb1 2.91 Co HB2 C:Blb1 1.60 Co OH3 C:Blb1 4.97 Co HNI C:Blb1 4.97 Co H29 C:Blb1 3.13 Co C7 C:Blb1 2.77 Co NK C:Blb1 3.65 Co C29 C:Blb1 2.93 Co H3E C:Blb1 3.26 Co C2 C:Blb1 2.86 Co NH C:Blb1 1.92 Co O40 C:Blb1 4.71 Co NJ C:Blb1 1.91 Co H60 C:Blb1 4.33 Co O12 C:Blb1 3.96 Co HNL C:Blb1 3.93 Co NL C:Blb1 4.87 Co C6 C:Blb1 2.82 Co H34 C:Blb1 3.93 Co C10 C:Blb1 2.76 Co H5E C:Blb1 4.69 Co C9 C:Blb1 4.07 Co C14 C:Blb1 3.40 Co H28 C:Blb1 4.87 Co HB1 C:Blb1 1.43 Co C3 C:Blb1 2.84 Co O1 C:Peo11 2.04 Co HO2 C:Peo11 3.71 Co O2 C:Peo11 3.07 Co C1 C:Blb1 3.59 Co OH1 C:Blb1 3.69 Co C8 C:Blb1 4.52 Co NA C:Blb1 4.84 Co HO3 C:Blb1 4.94 Co H3X C:Blb1 3.78 Co HBA C:Blb1 4.52 Co O4 C:Blb1 4.78 Co C12 C:Blb1 2.80 Co NB C:Blb1 1.94 Co C34 C:Blb1 4.94 Co C28 C:Blb1 4.08 Co C30 C:Blb1 3.95 Co H6 C:Blb1 2.99 Co H5X C:Blb1 4.92 Co H14 C:Blb1 4.43 Co NI C:Blb1 4.08 Co NC C:Blb1 1.99 Co O1 C:Blb1 3.34 Co NE C:Blb1 4.05 Co C31 C:Blb1 4.93 Co HNK C:Blb1 2.89 Co HNC C:Blb1 2.49 Co C5 C:Blb1 4.29 Co NG C:Blb1 1.85 Co H13 C:Blb1 3.93 Co H2 C:Blb1 3.77 Co C13 C:Blb1 3.05 Co C27 C:Blb1 2.91 Co HB2 C:Blb1 1.60 Co OH3 C:Blb1 4.97 Co HNI C:Blb1 4.97 Co H29 C:Blb1 3.13 Co C7 C:Blb1 2.77 Co NK C:Blb1 3.65 Co C29 C:Blb1 2.93 Co H3E C:Blb1 3.26 Co C2 C:Blb1 2.86 Co NH C:Blb1 1.92 Co O40 C:Blb1 4.71 Co NJ C:Blb1 1.91 Co H60 C:Blb1 4.33 Co O12 C:Blb1 3.96 Co HNL C:Blb1 3.93 Co NL C:Blb1 4.87 Co C6 C:Blb1 2.82 Co H34 C:Blb1 3.93 Co C10 C:Blb1 2.76 Co H5E C:Blb1 4.69 Co C9 C:Blb1 4.07 Co C14 C:Blb1 3.40 Co H28 C:Blb1 4.87 Co HB1 C:Blb1 1.43 Co C3 C:Blb1 2.84 Co O1 C:Peo11 2.04 Co HO2 C:Peo11 3.71 Co O2 C:Peo11 3.07 Co H4' C:Dt19 4.42 Co C1 C:Blb1 3.59 Co OH1 C:Blb1 3.69 Co C8 C:Blb1 4.52 Co NA C:Blb1 4.84 Co HO3 C:Blb1 4.94 Co H3X C:Blb1 3.78 Co HBA C:Blb1 4.52 Co O4 C:Blb1 4.78 Co C12 C:Blb1 2.80 Co NB C:Blb1 1.94 Co C34 C:Blb1 4.94 Co C28 C:Blb1 4.08 Co C30 C:Blb1 3.95 Co H6 C:Blb1 2.99 Co H5X C:Blb1 4.92 Co H14 C:Blb1 4.43 Co NI C:Blb1 4.08 Co NC C:Blb1 1.99 Co O1 C:Blb1 3.34 Co NE C:Blb1 4.05 Co C31 C:Blb1 4.93 Co HNK C:Blb1 2.89 Co HNC C:Blb1 2.49 Co C5 C:Blb1 4.29 Co NG C:Blb1 1.85 Co H13 C:Blb1 3.93 Co H2 C:Blb1 3.77 Co C13 C:Blb1 3.05 Co C27 C:Blb1 2.91 Co HB2 C:Blb1 1.60 Co OH3 C:Blb1 4.97 Co HNI C:Blb1 4.97 Co H29 C:Blb1 3.13 Co C7 C:Blb1 2.77 Co NK C:Blb1 3.65 Co C29 C:Blb1 2.93 Co H3E C:Blb1 3.26 Co C2 C:Blb1 2.86 Co NH C:Blb1 1.92 Co O40 C:Blb1 4.71 Co NJ C:Blb1 1.91 Co H60 C:Blb1 4.33 Co O12 C:Blb1 3.96 Co HNL C:Blb1 3.93 Co NL C:Blb1 4.87 Co C6 C:Blb1 2.82 Co H34 C:Blb1 3.93 Co C10 C:Blb1 2.76 Co H5E C:Blb1 4.69 Co C9 C:Blb1 4.07 Co C14 C:Blb1 3.40 Co H28 C:Blb1 4.87 Co HB1 C:Blb1 1.43 Co C3 C:Blb1 2.84 Co O1 C:Peo11 2.04 Co HO2 C:Peo11 3.71 Co O2 C:Peo11 3.07 interactive model: