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Cobalt in PDB 1g5l: Co(III)-Bleomycin-Ooh Bound to An Oligonucleotide Containing A Phosphoglycolate Lesion

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Co(III)-Bleomycin-Ooh Bound to An Oligonucleotide Containing A Phosphoglycolate Lesion (pdb code 1g5l). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Co(III)-Bleomycin-Ooh Bound to An Oligonucleotide Containing A Phosphoglycolate Lesion, PDB code: 1g5l:

Cobalt binding site 1 out of 1 in 1g5l

Go back to Cobalt Binding Sites List in 1g5l
Cobalt binding site 1 out of 1 in the Co(III)-Bleomycin-Ooh Bound to An Oligonucleotide Containing A Phosphoglycolate Lesion


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Co(III)-Bleomycin-Ooh Bound to An Oligonucleotide Containing A Phosphoglycolate Lesion within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co14

b:10.0
occ:1.00
HB1 C:BLB1 1.4 10.0 1.0
HB2 C:BLB1 1.6 10.0 1.0
NG C:BLB1 1.8 10.0 1.0
NJ C:BLB1 1.9 10.0 1.0
NH C:BLB1 1.9 10.0 1.0
NB C:BLB1 1.9 10.0 1.0
NC C:BLB1 2.0 10.0 1.0
O1 C:PEO11 2.0 10.0 1.0
HNC C:BLB1 2.5 10.0 1.0
C10 C:BLB1 2.8 10.0 1.0
C7 C:BLB1 2.8 10.0 1.0
C12 C:BLB1 2.8 10.0 1.0
C6 C:BLB1 2.8 10.0 1.0
C3 C:BLB1 2.8 10.0 1.0
C2 C:BLB1 2.9 10.0 1.0
HNK C:BLB1 2.9 10.0 1.0
C27 C:BLB1 2.9 10.0 1.0
C29 C:BLB1 2.9 10.0 1.0
H6 C:BLB1 3.0 10.0 1.0
C13 C:BLB1 3.1 10.0 1.0
O2 C:PEO11 3.1 10.0 1.0
H29 C:BLB1 3.1 10.0 1.0
H3E C:BLB1 3.3 10.0 1.0
O1 C:BLB1 3.3 10.0 1.0
C14 C:BLB1 3.4 10.0 1.0
C1 C:BLB1 3.6 10.0 1.0
NK C:BLB1 3.6 10.0 1.0
OH1 C:BLB1 3.7 10.0 1.0
HO2 C:PEO11 3.7 10.0 1.0
H2 C:BLB1 3.8 10.0 1.0
H3X C:BLB1 3.8 10.0 1.0
H13 C:BLB1 3.9 10.0 1.0
HNL C:BLB1 3.9 10.0 1.0
H34 C:BLB1 3.9 10.0 1.0
C30 C:BLB1 3.9 10.0 1.0
O12 C:BLB1 4.0 10.0 1.0
NE C:BLB1 4.1 10.0 1.0
C9 C:BLB1 4.1 10.0 1.0
C28 C:BLB1 4.1 10.0 1.0
NI C:BLB1 4.1 10.0 1.0
C5 C:BLB1 4.3 10.0 1.0
H60 C:BLB1 4.3 10.0 1.0
H4' C:DT19 4.4 10.0 1.0
H14 C:BLB1 4.4 10.0 1.0
HBA C:BLB1 4.5 10.0 1.0
C8 C:BLB1 4.5 10.0 1.0
H5E C:BLB1 4.7 10.0 1.0
O40 C:BLB1 4.7 10.0 1.0
O4 C:BLB1 4.8 10.0 1.0
NA C:BLB1 4.8 10.0 1.0
H28 C:BLB1 4.9 10.0 1.0
NL C:BLB1 4.9 10.0 1.0
H5X C:BLB1 4.9 10.0 1.0
C31 C:BLB1 4.9 10.0 1.0
C34 C:BLB1 4.9 10.0 1.0
HO3 C:BLB1 4.9 10.0 1.0
OH3 C:BLB1 5.0 10.0 1.0
HNI C:BLB1 5.0 10.0 1.0

Reference:

S.T.Hoehn, H.D.Junker, R.C.Bunt, C.J.Turner, J.Stubbe. Solution Structure of Co(III)-Bleomycin-Ooh Bound to A Phosphoglycolate Lesion Containing Oligonucleotide: Implications For Bleomycin-Induced Double-Strand Dna Cleavage. Biochemistry V. 40 5894 2001.
ISSN: ISSN 0006-2960
PubMed: 11352724
DOI: 10.1021/BI002635G
Page generated: Sun Dec 13 10:34:52 2020

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