Cobalt in PDB 1g5l: Co(III)-Bleomycin-Ooh Bound to An Oligonucleotide Containing A Phosphoglycolate Lesion

The binding sites of Cobalt atom in the Co(III)-Bleomycin-Ooh Bound to An Oligonucleotide Containing A Phosphoglycolate Lesion (pdb code 1g5l). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Co(III)-Bleomycin-Ooh Bound to An Oligonucleotide Containing A Phosphoglycolate Lesion, PDB code: 1g5l:

Cobalt binding site 1 out of 1 in the Co(III)-Bleomycin-Ooh Bound to An Oligonucleotide Containing A Phosphoglycolate Lesion


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Co(III)-Bleomycin-Ooh Bound to An Oligonucleotide Containing A Phosphoglycolate Lesion within 5.0Å range: probe atom residue distance (Å) B Occ B:Co14 b:10.0 occ:1.00 HB1 C:BLB1 1.4 10.0 1.0 HB2 C:BLB1 1.6 10.0 1.0 NG C:BLB1 1.8 10.0 1.0 NJ C:BLB1 1.9 10.0 1.0 NH C:BLB1 1.9 10.0 1.0 NB C:BLB1 1.9 10.0 1.0 NC C:BLB1 2.0 10.0 1.0 O1 C:PEO11 2.0 10.0 1.0 HNC C:BLB1 2.5 10.0 1.0 C10 C:BLB1 2.8 10.0 1.0 C7 C:BLB1 2.8 10.0 1.0 C12 C:BLB1 2.8 10.0 1.0 C6 C:BLB1 2.8 10.0 1.0 C3 C:BLB1 2.8 10.0 1.0 C2 C:BLB1 2.9 10.0 1.0 HNK C:BLB1 2.9 10.0 1.0 C27 C:BLB1 2.9 10.0 1.0 C29 C:BLB1 2.9 10.0 1.0 H6 C:BLB1 3.0 10.0 1.0 C13 C:BLB1 3.1 10.0 1.0 O2 C:PEO11 3.1 10.0 1.0 H29 C:BLB1 3.1 10.0 1.0 H3E C:BLB1 3.3 10.0 1.0 O1 C:BLB1 3.3 10.0 1.0 C14 C:BLB1 3.4 10.0 1.0 C1 C:BLB1 3.6 10.0 1.0 NK C:BLB1 3.6 10.0 1.0 OH1 C:BLB1 3.7 10.0 1.0 HO2 C:PEO11 3.7 10.0 1.0 H2 C:BLB1 3.8 10.0 1.0 H3X C:BLB1 3.8 10.0 1.0 H13 C:BLB1 3.9 10.0 1.0 HNL C:BLB1 3.9 10.0 1.0 H34 C:BLB1 3.9 10.0 1.0 C30 C:BLB1 3.9 10.0 1.0 O12 C:BLB1 4.0 10.0 1.0 NE C:BLB1 4.1 10.0 1.0 C9 C:BLB1 4.1 10.0 1.0 C28 C:BLB1 4.1 10.0 1.0 NI C:BLB1 4.1 10.0 1.0 C5 C:BLB1 4.3 10.0 1.0 H60 C:BLB1 4.3 10.0 1.0 H4' C:DT19 4.4 10.0 1.0 H14 C:BLB1 4.4 10.0 1.0 HBA C:BLB1 4.5 10.0 1.0 C8 C:BLB1 4.5 10.0 1.0 H5E C:BLB1 4.7 10.0 1.0 O40 C:BLB1 4.7 10.0 1.0 O4 C:BLB1 4.8 10.0 1.0 NA C:BLB1 4.8 10.0 1.0 H28 C:BLB1 4.9 10.0 1.0 NL C:BLB1 4.9 10.0 1.0 H5X C:BLB1 4.9 10.0 1.0 C31 C:BLB1 4.9 10.0 1.0 C34 C:BLB1 4.9 10.0 1.0 HO3 C:BLB1 4.9 10.0 1.0 OH3 C:BLB1 5.0 10.0 1.0 HNI C:BLB1 5.0 10.0 1.0

S.T.Hoehn, H.D.Junker, R.C.Bunt, C.J.Turner, J.Stubbe. Solution Structure of Co(III)-Bleomycin-Ooh Bound to A Phosphoglycolate Lesion Containing Oligonucleotide: Implications For Bleomycin-Induced Double-Strand Dna Cleavage. Biochemistry V. 40 5894 2001.
ISSN: ISSN 0006-2960
PubMed: 11352724
DOI: 10.1021/BI002635G